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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- An Integrated Approach Reveals Regulatory Controls on Bacterial... 2014 · 151 cites
- riboCIRC: a comprehensive database of translatable circRNAs 2021 · 82 cites
Deep data QC
86/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Escherichia coli str. K-12 substr. MG1655
Metrics (value · how obtained)
n content pct
0.002
measured
pct q20 bases
95.5
measured
pct q30 bases
92.1
measured
gc content pct
34.7
measured
mean read length
51
measured
mean base quality
35.3
measured
adapter content pct
0.09
measured
duplication rate pct
67.82
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.1
measured
×1
100%
mean base quality
35.3
measured
×0.6
100%
adapter content pct
0.09
measured
×0.4
100%
duplication rate pct
67.82
measured
×0.4
16%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0