Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE51372

GEO first seen 2018

Single Cell RNA-sequencing of Pancreatic Circulating Tumor Cells

Organism
Mus musculus
Samples
187
Type
Expression profiling by high...
Submitted
2013-10-17

Circulating Tumor Cells (CTCs) are shed from primary tumors into the bloodstream, mediating the hematogenous spread of cancer to distant organs. Using a pancreatic cancer mouse model, we applied a microfluidic device to isolate CTCs independently of tumor epitopes, subjecting these to single cell RNA-sequencing. This study was conducted to determine the heterogeneity of pancreatic CTCs and to compare these CTCs to matched primary tumors, cell line controls (NB508 cancer cell line and MEF non-can...

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
David T TingBen S WittnerAjay M ShahDavid T MiyamotoBrian W BranniganKristina XegaJordan C CicilianoHuili ZhuOlivia C MacKenzieJulie TrautweinMohammad ShahidHaley L EllisNa QuNabeel BardeesyMiguel N RiveraRavi KapurSridhar RamaswamyToshi ShiodaMehmet TonerShyamala MaheswaranDaniel A Haber
Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
187 / 187 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 128245906550 reported
total reads 2564918131 reported
supplementary file types TXT reported
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently