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Cell type-specific ribosome profiling in vivo.
Organism
Homo sapiens; Mus musculus
Samples
25
Type
Expression profiling by high...
Submitted
2013-10-18
We report cell-type specific ribosome profiling in a mouse glioma model.
Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Peter A SimsChristian GonzalezNicholas Hornstein
Reused by
- Translational control by lysine-encoding A-rich sequences 2015 · 126 cites
- riboCIRC: a comprehensive database of translatable circRNAs 2021 · 82 cites
4 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
other
Organism
Homo sapiens; Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 / 25 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
105685398541
reported
total reads
1046832607
reported
supplementary file types
TXT
reported
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently