GSE53197

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLO... 2017 · 85 cites

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana 82 bp RNA-seq with moderate Q30 rate (83.2%) and modest mean quality of 32.7, suggesting standard library construction with acceptable but not exceptional sequencing performance. Low N-content (0.11%) ensures clean bases. Searchable for plant bulk transcriptomics at moderate quality threshold.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Metrics (value · how obtained)

n content pct 0.11 measured

pct q20 bases 93.3 measured

pct q30 bases 83.2 measured

gc content pct 44 measured

mean read length 82 measured

mean base quality 32.7 measured

adapter content pct 0 measured

duplication rate pct 15.35 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.2 measured ×1 66%

mean base quality 32.7 measured ×0.6 78%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 15.35 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0