Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE53439

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 34 bp short-read RNA-seq with high Q30 composition (98%) and elevated mean quality of 38.7, consistent with short-read or small-RNA-enriched library sequencing. High GC content (58.1%) suggests either GC-biased transcript pool or targeted small-RNA capture. Searchable for human small-RNA or GC-rich transcript expression.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.01 measured
pct q20 bases 99.4 measured
pct q30 bases 98 measured
gc content pct 58.1 measured
mean read length 34 measured
mean base quality 38.7 measured
adapter content pct 0 measured
duplication rate pct 94.56 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%
mean base quality 38.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 94.56 measured ×0.4 0%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0