GSE53793

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep Sequencing of the Murine Olfactory Receptor Neuron Transcri... 2015 · 86 cites

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse 36 bp short-read RNA-seq with high Q30 rate (91.6%) and elevated GC content (56.6%), consistent with small-RNA or GC-biased transcript sequencing. Mean quality of 36.5 supports sensitive expression detection. Relevant for mouse transcript profiling with focus on GC-rich or small-RNA components.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 96.9 measured

pct q30 bases 91.6 measured

gc content pct 56.6 measured

mean read length 36 measured

mean base quality 36.5 measured

adapter content pct 0.21 measured

duplication rate pct 72.66 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.6 measured ×1 100%

mean base quality 36.5 measured ×0.6 100%

adapter content pct 0.21 measured ×0.4 100%

duplication rate pct 72.66 measured ×0.4 5%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0