Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE54236

GEO first seen 2018

Prospective gene expression analysis of human RNA samples from Hepatocellular Carcinoma in relation with growth rate and survival

Organism
Homo sapiens
Samples
161
Type
Expression profiling by arra...
Submitted
2014-01-21

The aim of this study is to identify by whole genome microarray expression profiling a molecular signature of HCC samples that correlates with growth rate of the tumor and survival. This signature could eventually be used as prognostic marker. The samples were prospectively derived from hepatocellular carcinoma tissue as well as non-tumor tissue from the livers of the same patients. Expression of five genes (ANGPT2, NETO2,NR4A1,DLL4,ESM1) from this signature was re-evaluated in a validatio...

Provenance — who produced it, who reused it

Linked to 109 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Erica VillaRosina CritelliBarbara LeiGuido MarzocchiCalogero CammàGianluigi GiannelliPatrizia PontissoStefano ColopiCristian CaporaliGiuseppe CabibboFabiola MilosaLivia MaccioMaria L Martinez-ChantarPaola TodescaElena TurolaAnnalisa BerselliNicola De MariaStefano BallestriFilippo SchepisPaola LoriaGiorgio E GerundaLuisa LosiFabrizio Di BenedettoUmberto Cillo
Reused by

63 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
TXT
Metrics (value · how obtained)
supplementary file types TXT reported
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently