Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE54238

GEO first seen 2015

lncRNAs and mRNAs expression profile in liver diseases including HCC

Organism
Homo sapiens
Samples
56
Type
Expression profiling by arra...
Submitted
2014-01-21

Sustained hepatic inflammation can contribute to cancer initiation and progression via tumor-initiating cell expansion, but underlying mechanisms remains unknown. Expression profiles of lncRNAs/mRNAs were measured in normal, chronic hepatitis, cirrhotic and cancerous livers. We found abundant disease-related lncRNAs/mRNAs deregulated across different stages of inflammation-triggered liver disease and refined a transformation gene signature to distinguish pathological liver tissues. Amongst this...

Provenance — who produced it, who reused it

Linked to 18 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Sheng-xian YuanJie WangFu YangQi-fei TaoLi-li WangYuan YangHao ZhengZhen-guang WangQing-guo XuLing ZhangFang WangLei L SunWei-ping Zhou
Reused by

17 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
PAIR
Metrics (value · how obtained)
supplementary file types PAIR reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently