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A high-resolution Amphimedon queenslandica transriptomic timecourse
Transcriptomic data for 59 single embryos and larvae samples of the sponge Amphimedon queenslandica
Provenance — who produced it, who reused it
Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Leon AnavyMichal LevinSally KhairNagayasu NakanishiSelene L Fernandez-ValverdeBernard M DegnanItai Yanai
Reused by
- Deep developmental transcriptome sequencing uncovers numerous ne... 2015 · 105 cites
- Landscape of histone modifications in a sponge reveals the origi... 2017 · 73 cites
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
86/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Amphimedon queenslandica
Metrics (value · how obtained)
n content pct
0.001
measured
pct q20 bases
97.7
measured
pct q30 bases
95.4
measured
gc content pct
36.3
measured
mean read length
35
measured
mean base quality
36.9
measured
adapter content pct
0
measured
duplication rate pct
66.78
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.4
measured
×1
100%
mean base quality
36.9
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
66.78
measured
×0.4
18%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0