GSE54729

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Modeling Alveolar Soft Part Sarcomagenesis in the Mouse: A Role... 2014 · 86 cites

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 50 bp single-end RNA-seq with strong quality metrics (Q30: 95.3%, mean 37.3) and no adapter contamination, indicating cleanly processed sequencing. Slightly depressed GC content (45.5%) is within acceptable range. Applicable to human expression quantification and targeted transcriptome surveys.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.009 measured

pct q20 bases 98.4 measured

pct q30 bases 95.3 measured

gc content pct 45.5 measured

mean read length 50 measured

mean base quality 37.3 measured

adapter content pct 0 measured

duplication rate pct 35.93 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.3 measured ×1 100%

mean base quality 37.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 35.93 measured ×0.4 87%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0