GSE54997

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Elucidation of Sigma Factor-Associated Networks in Pseudomonas a... 2015 · 145 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Pseudomonas aeruginosa

Metrics (value · how obtained)

n content pct 0.005 measured

pct q20 bases 78.7 measured

pct q30 bases 70.6 measured

gc content pct 34 measured

mean read length 101 measured

mean base quality 27.9 measured

adapter content pct 1.72 measured

duplication rate pct 39.68 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 70.6 measured ×1 3%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0