GSE55268

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Honeysuckle-encoded atypical microRNA2911 directly targets influ... 2014 · 461 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Lonicera japonica

Metrics (value · how obtained)

n content pct 0.02 measured

pct q20 bases 100 measured

pct q30 bases 99.4 measured

gc content pct 57.2 measured

mean read length 35 measured

mean base quality 67 measured

adapter content pct 0 measured

duplication rate pct 62.88 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.4 measured ×1 100%

mean base quality 67 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 62.88 measured ×0.4 27%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0