GSE55552

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Yap-Sox9 signaling determines hepatocyte plasticity and lineage-... 2021 · 141 cites
Single cell analysis of human foetal liver captures the transcri... 2019 · 133 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.05 measured

pct q20 bases 99.1 measured

pct q30 bases 97.2 measured

gc content pct 50.5 measured

mean read length 51 measured

mean base quality 38.2 measured

adapter content pct 0.06 measured

duplication rate pct 14.34 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%

mean base quality 38.2 measured ×0.6 100%

adapter content pct 0.06 measured ×0.4 100%

duplication rate pct 14.34 measured ×0.4 100%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0