Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE57049

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq data from this study show marginal sequence quality (65% Q30, 72% Q20) with elevated N-content (1.49%) and low mean base quality (24.4), indicating suboptimal sequencing conditions or possible input issues. While the 76 bp read length is reasonable, the quality limitations may necessitate stringent filtering, and reuse should prioritize abundant transcripts over lowly-expressed targets.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 1.486 measured
pct q20 bases 72 measured
pct q30 bases 65 measured
gc content pct 48.1 measured
mean read length 76 measured
mean base quality 24.4 measured
adapter content pct 0.46 measured
duplication rate pct 20.54 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 65 measured ×1 0%
mean base quality 24.4 measured ×0.6 0%
adapter content pct 0.46 measured ×0.4 100%
duplication rate pct 20.54 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0