Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE57110

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

37/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Rat bulk RNA-seq with 76 bp reads shows poor Q-score distribution (58.3% Q30, 71.3% Q20) and reports 0% GC content—an anomaly suggesting a data quality or reporting issue that warrants verification before reuse. The mean base quality (29) is moderate; the dataset may still yield usable expression profiles for high-abundance transcripts but is not ideal for sensitive analyses.

Data type / assay
bulk-RNA-seq
Organism
Rattus norvegicus
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 71.3 measured
pct q30 bases 58.3 measured
gc content pct 0 measured
mean read length 76 measured
mean base quality 29 measured
adapter content pct 0 measured
duplication rate pct 30.6 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 37/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 58.3 measured ×1 0%
mean base quality 29 measured ×0.6 17%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 30.6 measured ×0.4 99%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0