GSE57960

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Genome-wide identification of soybean WRKY transcription factors... 2016 · 101 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Glycine max (soybean) 101 bp paired-end RNA-seq with excellent quality characteristics (Q30: 97.5%, mean 37.7) and minimal adapter content, reflecting robust large-insert library construction. Slightly depressed GC content (44.1%) is consistent with legume genome composition. Searchable for plant transcriptomics and soybean agricultural genomics applications.

Data type / assay

bulk-RNA-seq

Organism

Glycine max

Metrics (value · how obtained)

n content pct 0.033 measured

pct q20 bases 99.1 measured

pct q30 bases 97.5 measured

gc content pct 44.1 measured

mean read length 101 measured

mean base quality 37.7 measured

adapter content pct 0.35 measured

duplication rate pct 11.05 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%

mean base quality 37.7 measured ×0.6 100%

adapter content pct 0.35 measured ×0.4 100%

duplication rate pct 11.05 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0