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Breast Cancer RNA-seq
RNA-seq was performed on breast cancer cell lines and primary tumors
Provenance — who produced it, who reused it
Linked to 24 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Katherine E VarleyRichard M Myers
Reused by
- Recurrent read-through fusion transcripts in breast cancer 2014 · 182 cites
- A comparison of per sample global scaling and per gene normaliza... 2017 · 98 cites
- Robustness of differential gene expression analysis of RNA-seq 2021 · 86 cites
21 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
QC cost
19 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently