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Human cortical transcriptome informs brain imaging
We carried out RNA-sequencing (RNA-seq) of adult human postmortem neocortical brain tissue, and then correlated those expression values with the fMRI signal in each brain region
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Guang Z WangT G BelgardDeng MaoLeslie ChenStefano BertoTodd PreussHanzhang LuDaniel H GeschwindGenevieve Konopka
Reused by
- Correspondence between Resting-State Activity and Brain Gene Exp... 2015 · 140 cites
- Significant Evolutionary Constraints on Neuron Cells Revealed by... 2020 · 81 cites
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
52 / 52 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
176843033100
reported
total reads
1768430331
reported
supplementary file types
TXT
reported
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently