Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE58604

GEO first seen 2015

Human cortical transcriptome informs brain imaging

Organism
Homo sapiens
Samples
52
Type
Expression profiling by high...
Submitted
2014-06-18

We carried out RNA-sequencing (RNA-seq) of adult human postmortem neocortical brain tissue, and then correlated those expression values with the fMRI signal in each brain region

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Guang Z WangT G BelgardDeng MaoLeslie ChenStefano BertoTodd PreussHanzhang LuDaniel H GeschwindGenevieve Konopka
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
52 / 52 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 176843033100 reported
total reads 1768430331 reported
supplementary file types TXT reported
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently