Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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GSE58644

GEO first seen 2020

The prognostic ease and difficulty of invasive breast carcinoma

Organism
Homo sapiens
Samples
321
Type
Expression profiling by arra...
Submitted
2014-06-18

Breast carcinoma (BC) have been extensively profiled by high-throughput technologies for over a decade, and broadly speaking, these studies can be grouped into those that seek to identify patient subtypes (studies of heterogeneity) or those that seek to identify gene signatures with prognostic or predictive capacity. The shear number of reported signatures has led to speculation that everything is prognostic in BC. Here we show that this ubiquity is an apparition caused by a poor understanding o...

Provenance — who produced it, who reused it

Linked to 12 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Matthew SudermanAli TofighEric R PaquetJulie LivingstoneNicholas BertosHong ZhaoMargarita SouleimanovaSean CoryRobert LesurfSolmaz ShahalizadehSadiq SalehNorberto Garcia LopezYasser RiazalhosseiniAttila OmerogluJosie Ursini-SiegelMorag ParkVanessa DumeauxMichael Hallett
Reused by

11 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently