Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE58935

GEO first seen 2014

Establishment of regions of genomic activity during the Drosophila maternal-to-zygotic transition

Organism
Drosophila melanogaster
Samples
50
Type
Genome binding/occupancy pro...
Submitted
2014-06-30

A conspicuous feature of early animal development is the lack of transcription from the embryonic genome, and it typically takes several hours to several days (depending on the species) until widespread transcription of the embryonic genome begins. Although this transition is ubiquitous, relatively little is known about how the shift from a transcriptionally quiescent to transcriptionally active genome is controlled. We describe here the genome-wide distributions and temporal dynamics of nucleos...

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Xiao Y LiMelissa M HarrisonTommy KaplanMichael B Eisen
Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
51 / 50 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 179514312200 reported
total reads 1795143122 reported
supplementary file types WIG, XLS reported
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently