Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE58966

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq generated on Illumina HiSeq 2000 platform with 1.23 billion reads across 122.6 Gb total bases, representing exceptionally large-scale transcriptome sequencing. Q30 rate of 84.1% reflects moderate HiSeq 2000 performance; this massive dataset offers deep coverage for comprehensive human expression studies despite moderate per-read quality. Applicable to large-scale human transcriptomics and expression atlases.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
27 / 27 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 122600244000 reported
total reads 1226002440 reported
n content pct 0.008 measured
pct q20 bases 92.5 measured
pct q30 bases 84.1 measured
gc content pct 49.9 measured
mean read length 100 measured
mean base quality 33.5 measured
adapter content pct 0.09 measured
duplication rate pct 11.73 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.1 measured ×1 71%
mean base quality 33.5 measured ×0.6 92%
adapter content pct 0.09 measured ×0.4 100%
duplication rate pct 11.73 measured ×0.4 100%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0