Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE59186

GEO first seen 2014

Transcriptional profiles of bovine in vivo pre-implantation development

Organism
Bos taurus
Samples
16
Type
Expression profiling by high...
Submitted
2014-07-08

During mammalian pre-implantation embryonic development dramatic and orchestrated changes occur in gene transcription. The identification of the complete changes has not been possible until the development of the Next Generation Sequencing Technology. Here we report the first transcriptome dynamics of single matured bovine oocytes and all stages of pre-implantation embryos developed in vivo. Surprisingly, nearly half of the bovine genome, 11,488 to 12,729 genes involved in more than 100 pathwa...

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Zongliang JiangJiangwen SunHong DongOscar LuoXinbao ZhengCraig ObergfellYong TangJinbo BiRachel O'NeillYijun RuanJingbo ChenXiuchun Tian
Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Bos taurus
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 / 16 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 25396341120 reported
total reads 427516024 reported
supplementary file types TXT reported
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently