Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE60012

GEO first seen 2017

Gender-specific post-natal demethylation and establishment of epigenetic memory

Organism
Homo sapiens; Mus musculus
Samples
173
Type
Expression profiling by high...
Submitted
2014-08-01

DNA methylation patterns are set up in a relatively fixed programmed manner during normal embryonic development and are then stably maintained. Using genome-wide analysis, we have discovered a postnatal pathway involving gender-specific demethylation that occurs exclusively in the male liver. This demodification is programmed to take place at tissue-specific enhancer sequences, and our data show that the methylation state at these loci is associated with and appears to play a role in the trans...

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yitzchak ReizelAdam SpiroOfra SabagYael SkverskyMerav HechtIlana KeshetBenjamin P BermanHoward Cedar
Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 93.9 measured
pct q30 bases 83.6 measured
gc content pct 33.5 measured
mean read length 101 measured
mean base quality 33.8 measured
adapter content pct 11.89 measured
duplication rate pct 48.43 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.6 measured ×1 68%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0