Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE60182

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq generated on Illumina HiSeq 2500 platform with 277 million reads across 56 Gb total bases, representing large-scale paired-end transcriptomics. Q30 rate of 88.8% reflects solid HiSeq 2500 performance suitable for robust expression quantification. Applicable to comprehensive human transcriptome studies with substantial sequencing depth.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 / 6 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 55962227258 reported
total reads 277040729 reported
n content pct 0.002 measured
pct q20 bases 91.6 measured
pct q30 bases 88.8 measured
gc content pct 45.5 measured
mean read length 101 measured
mean base quality 34.5 measured
adapter content pct 65.52 measured
duplication rate pct 41.05 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.8 measured ×1 94%
mean base quality 34.5 measured ×0.6 100%
adapter content pct 65.52 measured ×0.4 0%
duplication rate pct 41.05 measured ×0.4 75%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0