Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

GSE60826

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Arabidopsis thaliana 51 bp short-read RNA-seq with high Q30 rate (96.7%) and excellent mean base quality of 37.9, consistent with high-confidence plant transcriptome sequencing. No adapter contamination and balanced GC content (51.4%) ensure clean, unbiased measurement. Applicable to Arabidopsis expression studies with stringent quality standards.

Data type / assay
bulk-RNA-seq
Organism
Arabidopsis thaliana
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 99 measured
pct q30 bases 96.7 measured
gc content pct 51.4 measured
mean read length 51 measured
mean base quality 37.9 measured
adapter content pct 0 measured
duplication rate pct 61.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%
mean base quality 37.9 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 61.8 measured ×0.4 29%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0