Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE60955

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human bulk RNA-seq dataset provides 75 bp reads with good base quality (85.3% Q30, 92.7% Q20) and negligible adapter content, supporting confident transcript abundance measurement and differential expression detection. The combination of read length and quality is well-suited for standard RNA-seq workflows including alignment to reference genomes and quantification at the gene level.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 92.7 measured
pct q30 bases 85.3 measured
gc content pct 47.5 measured
mean read length 75 measured
mean base quality 33.6 measured
adapter content pct 0.05 measured
duplication rate pct 12.45 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.3 measured ×1 77%
mean base quality 33.6 measured ×0.6 93%
adapter content pct 0.05 measured ×0.4 100%
duplication rate pct 12.45 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0