GSE61271

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Identification of co-expression gene networks, regulatory genes... 2014 · 114 cites

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Sus scrofa

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 96.8 measured

pct q30 bases 90.8 measured

gc content pct 51.6 measured

mean read length 101 measured

mean base quality 35.6 measured

adapter content pct 0.51 measured

duplication rate pct 14.82 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.8 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0.51 measured ×0.4 100%

duplication rate pct 14.82 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0