GSE61689

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

A positional Toll receptor code directs convergent extension in... 2014 · 286 cites

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila bulk RNA-seq from this series demonstrates exceptional base quality (perfect 100% at both Q30 and Q20), with 50 bp reads and no adapter contamination, ensuring high-confidence expression measurement. The data are exceptionally clean and suitable for sensitive differential expression analysis, isoform-level quantification, and variant discovery in this model organism.

Data type / assay

bulk-RNA-seq

Organism

Drosophila melanogaster

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 51.9 measured

mean read length 50 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 55.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 55.83 measured ×0.4 43%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0