Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE62063

GEO first seen 2014

B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity

Organism
Homo sapiens; Mus musculus
Samples
76
Type
Genome binding/occupancy pro...
Submitted
2014-10-06

The antibody gene mutator AID promiscuously damages oncogenes and B cell identity genes leading to chromosomal translocations and tumorigenesis. Why non-immunoglobulin loci are susceptible to AID activity is unknown. Here we study AID-mediated lesions in the context of nuclear architecture and the B cell regulome. We show that AID targets are not randomly distributed across the genome, but are predominantly clustered within super-enhancers. Unexpectedly, in these domains AID deaminates highly ac...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jason QianQiao WangMarei DoseNathanael PruettKyong-Rim Kieffer-KwonWolfgang ReschGenqing LiangZhonghui TangEwy MatheChristopher BennerWendy DuboisSteevenson NelsonLaura VianThiago Y OliveiraMila JankovicOfir HakimAnna GazumyanRushad PavriParirokh AwasthiBin SongGeng LiuLongyun ChenShida ZhuLionel FeigenbaumLouis StaudtCornelis MurreYijun RuanDavide F RobbianiQiang Pan-HammarstromMichel C NussenzweigRafael Casellas
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently