GSE62526

GEO first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Low MITF/AXL ratio predicts early resistance to multiple targete... 2014 · 637 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 49 bp single-end RNA-seq with strong quality metrics (Q30: 96.5%, mean 37.8) and minimal adapter content, indicating well-optimized rapid sequencing. Balanced GC composition (48.4%) supports unbiased transcript detection. Searchable for human targeted or cost-effective bulk transcriptomics applications.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 98.8 measured

pct q30 bases 96.5 measured

gc content pct 48.4 measured

mean read length 49 measured

mean base quality 37.8 measured

adapter content pct 0.09 measured

duplication rate pct 29.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%

mean base quality 37.8 measured ×0.6 100%

adapter content pct 0.09 measured ×0.4 100%

duplication rate pct 29.65 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0