GSE62966

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Genetics and Expression Profile of the Tubulin Gene Superfamily... 2018 · 127 cites

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

29 / 29 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 338372574000 reported

total reads 2741080620 reported

n content pct 0.031 measured

pct q20 bases 94 measured

pct q30 bases 89.5 measured

gc content pct 56.3 measured

mean read length 100 measured

mean base quality 34.8 measured

adapter content pct 0.45 measured

duplication rate pct 3.78 measured

supplementary file types BEDGRAPH, FPKM_TRACKING, TXT, XLS reported

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.5 measured ×1 98%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0