Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE63472

GEO first seen 2016

Drop-Seq analysis of P14 mouse retina single-cell suspension

Organism
Mus musculus
Samples
7
Type
Expression profiling by high...
Submitted
2014-11-19

A cell suspension was prepared from wild-type P14 mouse retinas, and single-cell mRNAseq libraries were generated with Drop-Seq.

Provenance — who produced it, who reused it

Linked to 9 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Evan Z Macosko
Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.018 measured
pct q20 bases 85.9 measured
pct q30 bases 73.1 measured
gc content pct 47.9 measured
mean read length 20 measured
mean base quality 30.5 measured
adapter content pct 0.48 measured
duplication rate pct 8.99 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.1 measured ×1 16%
mean base quality 30.5 measured ×0.6 42%
adapter content pct 0.48 measured ×0.4 100%
duplication rate pct 8.99 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0