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GSE63473

GEO first seen 2015

Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets

Organism

Homo sapiens; Mus musculus; synthetic construct

Samples

203

Type

Expression profiling by high...

Submitted

2014-11-19

This SuperSeries is composed of the SubSeries listed below.

Provenance — who produced it, who reused it

Linked to 45 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Highly Parallel Genome-wide Expression Profiling of Individual C... 2015

Reused by

Fully-automated and ultra-fast cell-type identification using sp... 2022 · 783 cites
Epitranscriptomic m6A Regulation of Axon Regeneration in the Adu... 2018 · 440 cites
Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Int... 2018 · 435 cites
Four Key Steps Control Glycolytic Flux in Mammalian Cells 2018 · 391 cites
Interpretable dimensionality reduction of single cell transcript... 2018 · 382 cites
Non-coding Transcription Instructs Chromatin Folding and Compart... 2017 · 333 cites
Tunable Expression Tools Enable Single-Cell Strain Distinction i... 2017 · 258 cites
Dynamic Human Environmental Exposome Revealed by Longitudinal Pe... 2018 · 220 cites
In Vivo Lineage Tracing of Polyploid Hepatocytes Reveals Extensi... 2019 · 209 cites
Scalable analysis of cell-type composition from single-cell tran... 2019 · 185 cites
Demystifying “drop-outs” in single-cell UMI data 2020 · 154 cites
CaSTLe – Classification of single cells by transfer learning: Ha... 2018 · 132 cites
Ensembles of endothelial and mural cells promote angiogenesis in... 2022 · 132 cites
Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein... 2018 · 131 cites
Plant mRNAs move into a fungal pathogen via extracellular vesicl... 2023 · 122 cites
Cas4 Nucleases Define the PAM, Length, and Orientation of DNA Fr... 2018 · 110 cites
Learning interpretable cellular and gene signature embeddings fr... 2021 · 94 cites
Glucose starvation induces a switch in the histone acetylome for... 2022 · 91 cites
NOTCH1 signaling induces pathological vascular permeability in d... 2019 · 89 cites
The BRCT Domains of the BRCA1 and BARD1 Tumor Suppressors Differ... 2018 · 83 cites

24 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens; Mus musculus; synthetic construct

Files available

BAM, FASTA, GTF, TXT

Metrics (value · how obtained)

supplementary file types BAM, FASTA, GTF, TXT reported

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently