GSE64026

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

SRD: a <i>Staphylococcus</i> regulatory RNA database 2015 · 74 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Staphylococcus aureus subsp. aureus str. Newman

Metrics (value · how obtained)

n content pct 4.9 measured

pct q20 bases 99.3 measured

pct q30 bases 97.8 measured

gc content pct 36.6 measured

mean read length 101 measured

mean base quality 37.9 measured

adapter content pct 0.01 measured

duplication rate pct 74.45 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.8 measured ×1 100%

mean base quality 37.9 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 74.45 measured ×0.4 1%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0