GSE64090

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless... 2016 · 125 cites

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Yeast (Saccharomyces cerevisiae) bulk RNA-seq with 40 bp reads and good quality (87.8% Q30, 95.8% Q20) supports transcript abundance quantification in this well-characterized organism. The shorter read length is less limiting in yeast due to fewer splice junctions; the dataset is suitable for expression profiling, small RNA detection, and fungal comparative genomics.

Data type / assay

bulk-RNA-seq

Organism

Saccharomyces cerevisiae

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 95.8 measured

pct q30 bases 87.8 measured

gc content pct 47.7 measured

mean read length 40 measured

mean base quality 35.2 measured

adapter content pct 0 measured

duplication rate pct 70.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.8 measured ×1 89%

mean base quality 35.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 70.03 measured ×0.4 11%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0