Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE64545

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This murine bulk RNA-seq dataset uses 50 bp reads with good quality metrics (93.9% Q30, 96.5% Q20) and minimal adapter content, providing reliable signal for gene expression measurement at the transcript level. The relatively short reads may limit utility for isoform-level analysis or de novo assembly but are well-suited for quantification against a reference genome in expression profiling studies.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.017 measured
pct q20 bases 96.5 measured
pct q30 bases 93.9 measured
gc content pct 50.5 measured
mean read length 50 measured
mean base quality 37.1 measured
adapter content pct 0.22 measured
duplication rate pct 15.13 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 0.22 measured ×0.4 100%
duplication rate pct 15.13 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0