GSE64935

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Identification of genes essential for pellicle formation in Acin... 2015 · 77 cites

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Acinetobacter baumannii bulk RNA-seq demonstrates excellent sequence quality (96.8% Q30, 99% Q20) with 52 bp reads and negligible adapter content, ideal for bacterial expression profiling and virulence factor identification. The high base quality ensures reliable quantification of bacterial transcripts and is suitable for reuse in comparative genomics and infection-related gene expression studies.

Data type / assay

bulk-RNA-seq

Organism

Acinetobacter baumannii

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 99 measured

pct q30 bases 96.8 measured

gc content pct 42.7 measured

mean read length 52 measured

mean base quality 38 measured

adapter content pct 0.02 measured

duplication rate pct 54.1 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 54.1 measured ×0.4 46%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0