Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE65367

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with excellent base quality (97.7% Q30, 99.3% Q20) and 50 bp reads is significantly compromised by extremely high adapter content (90.02%), indicating inadequate library quality or severe processing artifact. Before reuse, stringent adapter removal and careful quality assessment are essential; if successful preprocessing is possible, the underlying sequence data could support expression profiling, but this requires verification.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 99.3 measured
pct q30 bases 97.7 measured
gc content pct 53 measured
mean read length 50 measured
mean base quality 38.2 measured
adapter content pct 90.02 measured
duplication rate pct 87.34 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%
mean base quality 38.2 measured ×0.6 100%
adapter content pct 90.02 measured ×0.4 0%
duplication rate pct 87.34 measured ×0.4 0%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0