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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- BPTF is required for c-MYC transcriptional activity and in vivo... 2016 · 181 cites
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 / 3 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2726168640
reported
total reads
68154216
reported
n content pct
0.003
measured
pct q20 bases
97.6
measured
pct q30 bases
92.1
measured
gc content pct
40.3
measured
mean read length
40
measured
mean base quality
36.5
measured
adapter content pct
0
measured
duplication rate pct
3.25
measured
supplementary file types
BED, WIG
reported
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.1
measured
×1
100%
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0