Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE66547

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq with 101 bp reads and moderate quality (86.5% Q30, 90.8% Q20) provides longer-read coverage suitable for transcript isoform detection. Modest adapter content (1.25%) is easily remediated; the dataset supports splicing analysis and improved alignment in repetitive regions, making it useful for complex transcriptome characterization in rodent systems.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.011 measured
pct q20 bases 90.8 measured
pct q30 bases 86.5 measured
gc content pct 45.2 measured
mean read length 101 measured
mean base quality 33.9 measured
adapter content pct 1.25 measured
duplication rate pct 14.59 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.5 measured ×1 83%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 1.25 measured ×0.4 100%
duplication rate pct 14.59 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0