Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE66822

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

21/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This murine bulk RNA-seq dataset exhibits severe quality issues with nearly absent Q30 performance (5.1%), 0% reported GC content (indicating a data anomaly), and low mean base quality (24.8), combined with 83.1 bp reads. The data quality is highly problematic and unsuitable for reliable reuse without investigation of the underlying sequencing or reporting issue.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 91.3 measured
pct q30 bases 5.1 measured
gc content pct 49.7 measured
mean read length 83.1 measured
mean base quality 24.8 measured
adapter content pct 0 measured
duplication rate pct 62.88 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 21/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 5.1 measured ×1 0%
mean base quality 24.8 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 62.88 measured ×0.4 27%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0