Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE67294

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq generated on an Illumina HiSeq 2000 platform yielded 246 million short reads (~12 billion bases total) with strong quality (95.6% Q30, 98.4% Q20), enabling comprehensive transcriptome characterization. The large sample coverage supports robust differential expression analysis and is suitable for meta-analyses integrating multiple RNA-seq experiments in murine systems.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 / 6 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 12079886063 reported
total reads 246528287 reported
n content pct 0.006 measured
pct q20 bases 98.4 measured
pct q30 bases 95.6 measured
gc content pct 45.4 measured
mean read length 49 measured
mean base quality 37.5 measured
adapter content pct 0 measured
duplication rate pct 32.89 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%
mean base quality 37.5 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 32.89 measured ×0.4 94%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0