Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE67333

GEO first seen 2015

Transcriptomics profiling of Alzheimer’s disease reveal novel molecular targets

Organism
Homo sapiens
Samples
8
Type
Expression profiling by high...
Submitted
2015-03-26

Our data provide a comprehensive list of transcriptomics alterations and warrant holistic approach including both coding and non-coding RNAs in functional studies aimed to understand the pathophysiology of LOAD

Provenance — who produced it, who reused it

Linked to 8 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Mohammad A FaghihiMarco MagistriDmitry VelmeshevMadina Makhmutova
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.05 measured
pct q20 bases 92.7 measured
pct q30 bases 86.9 measured
gc content pct 48.6 measured
mean read length 99 measured
mean base quality 34.2 measured
adapter content pct 0.02 measured
duplication rate pct 27.21 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.9 measured ×1 85%
mean base quality 34.2 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 27.21 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0