Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE6791

GEO first seen 2012

Gene Expression Profiles of HPV-Positive and -Negative Head/Neck and Cervical Cancers

Organism
Homo sapiens
Samples
84
Type
Expression profiling by arra...
Submitted
2007-01-18

Human papillomaviruses (HPVs) are associated with nearly all cervical cancers (CCs), 20-30% of head and neck cancers (HNCs), and other cancers. Because HNCs also arise in HPV-negative patients, this type of cancer provides unique opportunities to define similarities and differences of HPV-positive versus HPV-negative cancers arising in the same tissue. Here, we describe genome-wide expression profiling of 84 HNCs, CCs and site-matched normal epithelial samples in which we used laser capture mic...

Provenance — who produced it, who reused it

Linked to 69 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Dohun PyeonMichael A NewtonPaul F LambertJohan A den BoonSrikumar SenguptaCarmen J MarsitJoseph P ConnorThomas H HaugenElaine M SmithKarl T KelseyLubomir P TurekPaul Ahlquist
Reused by

61 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
CEL, EXP
Metrics (value · how obtained)
supplementary file types CEL, EXP reported
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently