Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE68056

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq with 50 bp reads and moderate quality (85.5% Q30, 91.5% Q20) provides adequate coverage for detecting abundant transcripts and robust differential expression patterns. The quality metrics are acceptable for standard gene-level quantification, though sensitive analyses targeting low-abundance transcripts may be limited; reuse is suitable for primary expression profiling studies.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.007 measured
pct q20 bases 91.5 measured
pct q30 bases 85.5 measured
gc content pct 51.8 measured
mean read length 50 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 17.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 17.69 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0