The landscape of pharmacogenomic interactions in human cancer
Systematic studies of the cancer genome are providing unprecedented insights into the molecular nature of human cancer. Using this information to guide the development and application of therapies in the clinic remains challenging. Here we report how cancer driving alterations detected in 11,215 tumors and 29 different tissues (integrating multiple omics) correlate with response to 265 compounds profiled in 1,001 cancer cell lines. We find that cell lines faithfully resemble tumours on the domai...
Provenance — who produced it, who reused it
Linked to 31 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Community assessment to advance computational prediction of canc... 2019 · 362 cites
- Pan-cancer deconvolution of tumour composition using DNA methyla... 2018 · 345 cites
- Epigenetic regulation of gene expression in cancer: techniques,... 2017 · 140 cites
- EPISCORE: cell type deconvolution of bulk tissue DNA methylomes... 2020 · 119 cites
- Cytoskeletal Control of Antigen-Dependent T Cell Activation 2019 · 94 cites
- MethylResolver—a method for deconvoluting bulk DNA methylation p... 2020 · 91 cites
25 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently
Scientific quality
Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.