Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

GSE68806

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq using 101 bp reads achieves excellent quality (95.8% Q30, 98.9% Q20) with minimal adapter content, enabling comprehensive isoform-level expression analysis and transcript structure characterization. The longer reads with high fidelity support splice junction mapping and complex transcriptome assembly, suitable for reuse in detailed expression studies.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.014 measured
pct q20 bases 98.9 measured
pct q30 bases 95.8 measured
gc content pct 48 measured
mean read length 101 measured
mean base quality 37.2 measured
adapter content pct 0.86 measured
duplication rate pct 40.86 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%
mean base quality 37.2 measured ×0.6 100%
adapter content pct 0.86 measured ×0.4 100%
duplication rate pct 40.86 measured ×0.4 76%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0