Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE68872

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with 51 bp reads demonstrates exceptional quality (97.9% Q30, 99.3% Q20) and minimal adapter presence, supporting high-confidence gene expression measurement and biomarker discovery. The excellent base fidelity across the read length ensures reliable identification of expression differences even at modest fold-changes.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.006 measured
pct q20 bases 99.3 measured
pct q30 bases 97.9 measured
gc content pct 50.7 measured
mean read length 51 measured
mean base quality 38.5 measured
adapter content pct 0.37 measured
duplication rate pct 19.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 38.5 measured ×0.6 100%
adapter content pct 0.37 measured ×0.4 100%
duplication rate pct 19.72 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0