GSE69092

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

ELAVL2-regulated transcriptional and splicing networks in human... 2016 · 85 cites

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human bulk RNA-seq dataset uses longer 100 bp reads with moderate quality (82.1% Q30, 92.2% Q20) and minimal adapter contamination, providing improved isoform-level resolution while maintaining good base accuracy. The extended read length supports better read mapping and is suitable for splice-variant analysis and more complex transcriptome assembly compared to shorter-read protocols.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 92.2 measured

pct q30 bases 82.1 measured

gc content pct 48.4 measured

mean read length 100 measured

mean base quality 33.1 measured

adapter content pct 0.16 measured

duplication rate pct 5.66 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.1 measured ×1 61%

mean base quality 33.1 measured ×0.6 85%

adapter content pct 0.16 measured ×0.4 100%

duplication rate pct 5.66 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0