Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE69241

GEO first seen 2015

Analysis of human, chimpanzee, macaque and mouse tissue transcriptomes using Next Generation Sequencing

Organism
Macaca mulatta; Pan troglodytes; Homo sapiens; Mus musculus
Samples
27
Type
Expression profiling by high...
Submitted
2015-05-26

We performed deep strand-specific sequencing of poly-adenylated RNA (polyA+ RNAseq) from human, chimpanzee, macaque and mouse tissues, with the goal of detecting numerous non-annotated poorly expressed and antisense genes. We identified thousands of annotated and novel genes, especially in testis. We discovered that ~2% of the human and chimpanzee multiexonic genes were specific from such species.

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jorge Ruiz-OreraJessica Hernandez-RodriguezTomàs Marqués-BonetM M Albà
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Macaca mulatta; Homo sapiens; Mus musculus; Pan troglodytes
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
27 / 27 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 395085942361 reported
total reads 2065181899 reported
supplementary file types CUFF reported
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently